Genomes …

Genomes are grouped by domain in the pop-up menus. First the Bacteria are listed, then the Archaea and then Eukaryota.

Within each domain genomes are listed in alphabetical order.

Genome query for

Genetic mosaicism

We provide lists of a genome's ORFs whose best match outside the genome's own lineage is to another, specified, lineage. For instance, which of the ORFs from Methanococcus jannaschii has a best match outside the Archaea to Proteobacteria?
more information...

Choose a BLASTP cutoff e-value (1.0e-300 to 1.0e-3): 1.0e-
(You may select a range of BLASTP cutoff e-values for this analysis by entering first.last.step (e.g., 10.100.5 would result in 19 separate analyses, at 10, 15, 20, 25, ..., 95, 100. If you omit the final number (e.g. 10.100) the step size defaults to 10. If you enter only a single number (e.g. 10) the query runs a single analysis. Note that "Results from my last query" is not updated if you select a range of BLASTP e-values.))

Choose a genome:

And ask to find the ORFs whose best match outside of the genome's lineage:
at top-level taxonomic classification (e.g., Bacteria)
at 2nd-level taxonomic classification (e.g., Proteobacteria)
at 3rd-level taxonomic classification (e.g., gamma subdivision)
at 4th-level taxonomic classification (e.g., Enterobacteriaceae)

is within the lineage:

Enter a valid taxonomy, up to first four taxa only.
e.g. Archaea
e.g. Archaea; Crenarchaeota
e.g. Archaea; Crenarchaeota; Sulfolobales
e.g. Archaea; Crenarchaeota; Sulfolobales; Sulfolobaceae