Genome query for

Competitive matching

Construct two sets of genomes by adding or removing genomes from one of the following preselects:

A blank list.
All genomes preselected.
All archaeal genomes preselected.
All bacterial genomes preselected.

After you have defined these two sets, this query then returns all ORFs from a selected genome whose best match to a genome from the first set is better than the best match to genomes from the second set.
more information...

Choose a BLASTP cutoff e-value (1.0e-300 to 1.0e-3): 1.0e-
(You may select a range of BLASTP cutoff e-values for this analysis by entering first.last.step (e.g., 10.100.5 would result in 19 separate analyses, at 10, 15, 20, 25, ..., 95, 100. If you omit the final number (e.g. 10.100) the step size defaults to 10. If you enter only a single number (e.g. 10) the query runs a single analysis. Note that "Results from my last query" is not updated if you select a range of BLASTP e-values.))

Choose a genome:

Include ORFs matching set#1 but not necessarily set#2.
Require ORFs to match both sets #1 and #2.

Select the minimum difference in normalized BLASTP scores to report: