Genomes

Genomes are grouped by domain in the pop-up menus. First the Bacteria are listed, then the Archaea and then Eukaryota.

Within each domain genomes are listed in alphabetical order.

Genome query for

ORFs more closely related than expected

For any pair of sequenced genomes, we identify all of their protein-coding genes which are more closely related to an outgroup genome than they are to one another.
more information...

This analysis uses a BLASTP cutoff e-value of 1.0e-3.

Choose a pair of genomes, assumed to be sister taxa:
(If not true sister taxa, the tree of available taxa is pruned to make the selected pair sisters.)
Genome A:

Genome B:

Choose the threshold proportional distance to the outgroup sequence, relative to the sister group distance:

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