Analyses by Category

Lineage- or Species-specific ORFs

Comparative Inventories of Genomes

Multigenomic Comparisons

ORFs Matching a Set of Genomes

Exclusively Shared ORFs

Genetic Mosaicism

Select ORFs by Functional Category

Sorted Lists of Protein Characteristics

Protein Characteristics Plotted

Cumulative Strand Bias Plots

Genomic Dot Plots

Organism Phylogenies

Four-Taxon Tree Analysis

Intergenic Distances

Logical NOT of Query

List Best Matches

Competitive Matching

Retrieve Sequences

Gene Distance Matrix

Similarity Histogram

ORFs Closer than Expected

Find Ubiquitous Genes

List Named Ubiquitous Genes

Find Cross-Phylum Ubiquitous Genes

Available Genomes

Genomes

Genomes are grouped by domain in the pop-up menus. First the Bacteria are listed, then the Archaea and then Eukaryota.

Within each domain genomes are listed in alphabetical order.

Genome query for

List named ubiquitous genes

After defining a group of genomes (as set #1), find genes that are ubiquitously distributed within this group. Construct your set by adding or removing genomes from one of the following preselects:

A blank list.
All genomes preselected.
All archaeal genomes preselected.
All bacterial genomes preselected.
more information...

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