Choose a BLASTP cutoff e-value (1.0e-300 to 1.0e-3): 1.0e- 
(You may select a range of BLASTP cutoff e-values for this analysis by entering first.last.step (e.g., 10.100.5 would result in 19 separate analyses, at 10, 15, 20, 25, ..., 95, 100. If you omit the final number (e.g. 10.100) the step size defaults to 10. If you enter only a single number (e.g. 10) the query runs a single analysis. Note that "Results from my last query" is not updated if you select a range of BLASTP e-values.))

Choose the genomes:

Choose an option:

ORFs from Genome #1 which are found in Genome #2
ORFs from Genome #1 which have a reciprocal best match in Genome #2
ORFs from Genome #1 which are not found in Genome #2

And finally: