Genome query for

Define a set of genomes

Using the check boxes, define a set of genomes to use for your next series of queries.
more information...

Include any combination of the following genomes:

Archaea

Crenarchaeota:
Aeropyrum pernix k1
Hyperthermus butylicus dsm_5456
Pyrobaculum aerophilum im2
Pyrobaculum calidifontis jcm_11548
Pyrobaculum islandicum dsm_4184
Staphylothermus marinus f1
Sulfolobus acidocaldarius dsm_639
Sulfolobus solfataricus p2
Sulfolobus tokodaii 7
Thermofilum pendens hrk_5

Euryarchaeota:
Archaeoglobus fulgidus dsm_4304
Haloarcula marismortui atcc_43049
Halobacterium salinarum nrc-1
Haloquadratum walsbyi dsm_16790
Methanocaldococcus jannaschii dsm_2661
Methanococcoides burtonii dsm_6242
Methanococcus maripaludis s2
Methanococcus maripaludis c5
Methanocorpusculum labreanum z
Methanoculleus marisnigri jr1
Methanopyrus kandleri av19
Methanosarcina acetivorans c2a
Methanosarcina barkeri fusaro
Methanosarcina mazei go1
Methanosphaera stadtmanae dsm_3091
Methanospirillum hungatei jf-1
Methanothermobacter thermautotrophicus delta
Methanothrix thermophila pt
Natronomonas pharaonis dsm_2160
Picrophilus torridus dsm_9790
Pyrococcus abyssi ge5
Pyrococcus furiosus dsm_3638
Pyrococcus horikoshii ot3
Thermococcus kodakarensis kod1
Thermoplasma acidophilum dsm_1728
Thermoplasma volcanium gss1

Nanoarchaeota:
Nanoarchaeum equitans kin4-m

Bacteria

Acidobacteria:
Acidobacteria sp. ellin345
Solibacter usitatus ellin6076

Actinobacteria:
Acidothermus cellulolyticus 11b
Arthrobacter aurescens tc1
Arthrobacter sp. fb24
Bifidobacterium adolescentis atcc_15703
Bifidobacterium longum ncc2705
Corynebacterium diphtheriae nctc_13129
Corynebacterium efficiens ys-314
Corynebacterium glutamicum atcc_13032
Corynebacterium glutamicum atcc_13032
Corynebacterium jeikeium k411
Frankia alni acn14a
Frankia sp. cci3
Leifsonia xyli ctcb07
Mycobacterium avium 104
Mycobacterium avium k-10
Mycobacterium bovis bcg_pasteur_1173p2
Mycobacterium bovis af212297
Mycobacterium leprae tn
Mycobacterium smegmatis mc2_155
Mycobacterium sp. mcs
Mycobacterium sp. jls
Mycobacterium sp. kms
Mycobacterium tuberculosis cdc1551
Mycobacterium tuberculosis h37rv
Mycobacterium ulcerans agy99
Mycobacterium vanbaalenii pyr-1
Nocardia farcinica ifm_10152
Nocardioides sp. js614
Propionibacterium acnes kpa171202
Rhodococcus sp. rha1
Rubrobacter xylanophilus dsm_9941
Saccharopolyspora erythraea nrrl_2338
Streptomyces avermitilis ma-4680
Streptomyces coelicolor a32
Thermobifida fusca yx
Tropheryma whipplei tw0827
Tropheryma whipplei twist

Aquificae:
Aquifex aeolicus vf5

Bacteroidetes:
Bacteroides fragilis ych46
Bacteroides fragilis nctc_9343
Bacteroides thetaiotaomicron vpi-5482
Cytophaga hutchinsonii atcc_33406
Gramella forsetii kt0803
Porphyromonas gingivalis w83
Salinibacter ruber dsm_13855

Chlamydiae:
Candidatus Protochlamydia amoebophila uwe25
Chlamydia muridarum nigg
Chlamydia trachomatis ahar-13
Chlamydia trachomatis duw-3cx
Chlamydophila abortus s263
Chlamydophila caviae gpic
Chlamydophila felis fec-56
Chlamydophila pneumoniae ar39
Chlamydophila pneumoniae cwl029
Chlamydophila pneumoniae j138
Chlamydophila pneumoniae tw-183

Chlorobi:
Chlorobaculum tepidum tls
Chlorobium chlorochromatii cad3
Chlorobium phaeobacteroides dsm_266
Pelodictyon luteolum dsm_273

Chloroflexi:
Dehalococcoides ethenogenes 195
Dehalococcoides sp. cbdb1

Cyanobacteria:
Anabaena variabilis atcc_29413
Gloeobacter violaceus pcc_7421
Nostoc sp. pcc_7120
Prochlorococcus marinus mit_9303
Prochlorococcus marinus as9601
Prochlorococcus marinus mit_9515
Prochlorococcus marinus mit_9312
Prochlorococcus marinus natl2a
Prochlorococcus marinus natl1a
Prochlorococcus marinus mit_9301
Prochlorococcus marinus ccmp1
Prochlorococcus marinus mit_9313
Prochlorococcus marinus ccmp13
Synechococcus elongatus pcc_7942
Synechococcus elongatus pcc_6301
Synechococcus sp. cc9311
Synechococcus sp. cc9605
Synechococcus sp. cc9902
Synechococcus sp. ja-3-3ab
Synechococcus sp. ja-2-3ba2-13
Synechococcus sp. wh_8102
Synechocystis sp. pcc_6803
Thermosynechococcus elongatus bp-1
Trichodesmium erythraeum ims101

Deinococcus-Thermus:
Deinococcus geothermalis dsm_11300
Deinococcus radiodurans r1
Thermus thermophilus hb27
Thermus thermophilus hb8

Firmicutes:
Aster yellows witches'-broom phytoplasma aywb
Bacillus anthracis ames_ancestor
Bacillus anthracis sterne
Bacillus anthracis ames
Bacillus cereus e33l
Bacillus cereus atcc_14579
Bacillus cereus atcc_10987
Bacillus clausii ksm-k16
Bacillus halodurans c-125
Bacillus licheniformis atcc_14580
Bacillus licheniformis atcc_14580
Bacillus subtilis 168
Bacillus thuringiensis konkukian_97-2
Bacillus thuringiensis al_hakam
Carboxydothermus hydrogenoformans z-2901
Clostridium acetobutylicum atcc_824
Clostridium difficile 630
Clostridium novyi nt
Clostridium perfringens sm101
Clostridium perfringens atcc_13124
Clostridium perfringens 13
Clostridium tetani e88
Clostridium thermocellum atcc_27405
Desulfitobacterium hafniense y51
Desulfotomaculum reducens mi-1
Enterococcus faecalis v583
Geobacillus kaustophilus hta426
Lactobacillus acidophilus ncfm
Lactobacillus brevis atcc_367
Lactobacillus casei atcc_334
Lactobacillus delbrueckii atcc_1
Lactobacillus delbrueckii atcc_b
Lactobacillus gasseri atcc_33323
Lactobacillus johnsonii ncc_533
Lactobacillus plantarum wcfs1
Lactobacillus sakei 23k
Lactobacillus salivarius ucc118
Lactococcus lactis mg1363
Lactococcus lactis sk11
Lactococcus lactis il1403
Leuconostoc mesenteroides atc
Listeria innocua clip11262
Listeria monocytogenes egd-e
Listeria monocytogenes 4b_f2365
Listeria welshimeri 6b_slcc5334
Mesoplasma florum l1
Moorella thermoacetica atcc_39073
Mycoplasma capricolum atcc_27343
Mycoplasma gallisepticum r
Mycoplasma genitalium g37
Mycoplasma hyopneumoniae 7448
Mycoplasma hyopneumoniae j
Mycoplasma hyopneumoniae 232
Mycoplasma mobile 163k
Mycoplasma mycoides sc_pg1
Mycoplasma penetrans hf-2
Mycoplasma pneumoniae m129
Mycoplasma pulmonis uab_ctip
Mycoplasma synoviae 53
Oceanobacillus iheyensis hte831
Oenococcus oeni psu-1
Onion yellows phytoplasma oy-m
Pediococcus pentosaceus atcc_25745
Staphylococcus aureus usa300
Staphylococcus aureus nctc_8325
Staphylococcus aureus col
Staphylococcus aureus mu50
Staphylococcus aureus n315
Staphylococcus aureus mrsa252
Staphylococcus aureus mssa476
Staphylococcus aureus mw2
Staphylococcus aureus rf122
Staphylococcus epidermidis atcc_12228
Staphylococcus epidermidis rp62a
Staphylococcus haemolyticus jcsc1435
Staphylococcus saprophyticus *P15596
Streptococcus agalactiae a909
Streptococcus agalactiae 2603vr
Streptococcus agalactiae nem316
Streptococcus mutans ua159
Streptococcus pneumoniae d39
Streptococcus pneumoniae tigr4
Streptococcus pneumoniae r6
Streptococcus pyogenes mgas10394
Streptococcus pyogenes mgas6180
Streptococcus pyogenes mgas5005
Streptococcus pyogenes mgas9429
Streptococcus pyogenes mgas10270
Streptococcus pyogenes mgas2096
Streptococcus pyogenes mgas10750
Streptococcus pyogenes m1_gas
Streptococcus pyogenes mgas8232
Streptococcus pyogenes ssi-1
Streptococcus pyogenes mgas315
Streptococcus sanguinis sk36
Streptococcus thermophilus lmg_18311
Streptococcus thermophilus cnrz1066
Streptococcus thermophilus lmd-9
Symbiobacterium thermophilum iam_14863
Syntrophomonas wolfei goettinge
Thermoanaerobacter tengcongensis mb4
Ureaplasma parvum 3_atcc_700970

Fusobacteria:
Fusobacterium nucleatum atcc_2558

Planctomycetes:
Rhodopirellula baltica sh_1

Proteobacteria:
Acidovorax avenae aac00-1
Acidovorax sp. js42
Acinetobacter baumannii atcc_17978
Acinetobacter sp. adp1
Actinobacillus pleuropneumoniae l20
Aeromonas hydrophila atcc_7966
Agrobacterium tumefaciens c58
Agrobacterium tumefaciens c58
Alcanivorax borkumensis sk2
Alkalilimnicola ehrlichei mlhe-1
Anaeromyxobacter dehalogenans 2cp-c
Anaplasma marginale st_maries
Anaplasma phagocytophilum hz
Azoarcus sp. bh72
Azoarcus sp. ebn1
Bartonella bacilliformis kc583
Bartonella henselae houston-1
Bartonella quintana toulouse
Bdellovibrio bacteriovorus hd100
Blochmannia floridanus *P443
Bordetella bronchiseptica rb50
Bordetella parapertussis 12822
Bordetella pertussis tohama_i
Bradyrhizobium japonicum usda_110
Brucella abortus 1_9-941
Brucella abortus abortus_2308
Brucella melitensis 16m
Brucella suis 1330
Buchnera aphidicola cc_cinara_cedri
Buchnera aphidicola aps_acyrthosiphon_pisum
Buchnera aphidicola bp_baizongia_pistaciae
Buchnera aphidicola sg_schizaphis_graminum
Burkholderia cenocepacia hi2424
Burkholderia cenocepacia au_1054
Burkholderia cepacia ammd
Burkholderia mallei nctc_10229
Burkholderia mallei nctc_10247
Burkholderia mallei savp1
Burkholderia mallei atcc_23344
Burkholderia pseudomallei 668
Burkholderia pseudomallei 1710b
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei k96243
Burkholderia sp. 383
Burkholderia thailandensis e264
Burkholderia vietnamiensis g4
Burkholderia xenovorans lb400
Campylobacter fetus 82-40
Campylobacter jejuni 81-176
Campylobacter jejuni rm1221
Campylobacter jejuni nctc_11168
Candidatus Baumannia cicadellinicola hc_homalodisca_coa
Candidatus Blochmannia pennsylvanicus bpen
Candidatus Carsonella ruddii *P17977
Candidatus Pelagibacter ubique htcc1062
Candidatus Ruthia magnifica cm_calyptogena_m
Caulobacter vibrioides cb15
Chromobacterium violaceum atcc_12472
Chromohalobacter salexigens dsm_3043
Colwellia psychrerythraea 34h
Coxiella burnetii rsa_493
Cupriavidus metallidurans ch34
Cupriavidus necator jmp134
Cupriavidus necator h16
Dechloromonas aromatica rcb
Desulfotalea psychrophila lsv54
Desulfovibrio desulfuricans g20
Desulfovibrio vulgaris dp4
Desulfovibrio vulgaris hilden
Ehrlichia canis jake
Ehrlichia chaffeensis arkansas
Ehrlichia ruminantium welgevonden
Ehrlichia ruminantium gardel
Ehrlichia ruminantium welgevonden
Erythrobacter litoralis htcc2594
Escherichia coli 536
Escherichia coli uti89
Escherichia coli w3110
Escherichia coli apec_o1
Escherichia coli k12
Escherichia coli o157:h7_sakai
Escherichia coli o157:h7_edl933
Escherichia coli cft073
Francisella tularensis u112
Francisella tularensis *P16421
Francisella tularensis osu18
Francisella tularensis fsc198
Francisella tularensis wy96-3418
Francisella tularensis schu_s4
Geobacter metallireducens gs-15
Geobacter sulfurreducens pca
Gluconobacter oxydans 621h
Granulibacter bethesdensis cgdnih1
Haemophilus ducreyi 35000hp
Haemophilus influenzae 86-028np
Haemophilus influenzae rd_kw20
Hahella chejuensis kctc_2396
Halorhodospira halophila sl1
Helicobacter acinonychis sheeba
Helicobacter hepaticus atcc_51449
Helicobacter pylori hpag1
Helicobacter pylori 26695
Helicobacter pylori j99
Herminiimonas arsenicoxydans *P13467
Histophilus somni 129pt
Hyphomonas neptunium atcc_15444
Idiomarina loihiensis l2tr
Jannaschia sp. ccs1
Lawsonia intracellularis phemn1-00
Legionella pneumophila lens
Legionella pneumophila paris
Legionella pneumophila phi
Magnetococcus sp. mc-1
Magnetospirillum magneticum amb-1
Mannheimia succiniciproducens mbel55e
Maricaulis maris mcs10
Marinobacter hydrocarbonoclasticus vt8
Mesorhizobium loti maff303099
Mesorhizobium sp. bnc1
Methylibium petroleiphilum pm1
Methylobacillus flagellatus kt
Methylococcus capsulatus bath
Myxococcus xanthus dk_1622
Neisseria gonorrhoeae fa_1090
Neisseria meningitidis mc58
Neisseria meningitidis z2491
Neisseria meningitidis fam18
Neorickettsia sennetsu miyayama
Nitrobacter hamburgensis x14
Nitrobacter winogradskyi nb-255
Nitrosococcus oceani atcc_19707
Nitrosomonas europaea atcc_19718
Nitrosomonas eutropha c91
Nitrosospira multiformis atcc_25196
Novosphingobium aromaticivorans dsm_12444
Paracoccus denitrificans pd1222
Pasteurella multocida pm70
Pectobacterium atrosepticum scri1043
Pelobacter carbinolicus dsm_2380
Pelobacter propionicus dsm_2379
Photobacterium profundum ss9
Photorhabdus luminescens tto1
Polaromonas naphthalenivorans cj2
Polaromonas sp. js666
Pseudoalteromonas atlantica t6c
Pseudoalteromonas haloplanktis tac125
Pseudomonas aeruginosa pao1
Pseudomonas aeruginosa ucbpp-pa14
Pseudomonas entomophila l48
Pseudomonas fluorescens pfo-1
Pseudomonas fluorescens pf-5
Pseudomonas putida kt2440
Pseudomonas savastanoi phaseolicola_1448a
Pseudomonas syringae syringae_b728a
Pseudomonas syringae group genomosp. 3 tomato_dc3000
Psychrobacter arcticus 273-4
Psychrobacter cryohalolentis k5
Psychromonas ingrahamii 37
Ralstonia solanacearum gmi1000
Rhizobium etli cfn_42
Rhizobium leguminosarum bv_viciae_3841
Rhodobacter sphaeroides atcc_17029
Rhodobacter sphaeroides 241
Rhodoferax ferrireducens t118
Rhodopseudomonas palustris haa2
Rhodopseudomonas palustris bisb5
Rhodopseudomonas palustris bisb18
Rhodopseudomonas palustris bisa53
Rhodopseudomonas palustris cga009
Rhodospirillum rubrum atcc_11170
Rickettsia bellii rml369-c
Rickettsia conorii malish_7
Rickettsia felis urrwxcal2
Rickettsia prowazekii madrid_e
Rickettsia typhi wilmington
Roseobacter denitrificans och_114
Saccharophagus degradans 2-40
Salmonella enterica typhi
Salmonella enterica typhi
Salmonella enterica choler
Salmonella paratyphi paraty
Salmonella typhimurium lt2
Shewanella amazonensis sb2b
Shewanella baltica os155
Shewanella denitrificans os217
Shewanella frigidimarina ncimb_400
Shewanella loihica pv-4
Shewanella oneidensis mr-1
Shewanella sp. w3-18-1
Shewanella sp. mr-7
Shewanella sp. mr-4
Shewanella sp. ana-3
Shigella boydii sb227
Shigella dysenteriae sd197
Shigella flexneri 5_8401
Shigella flexneri 2a_301
Shigella flexneri 2a_2457t
Shigella sonnei ss046
Silicibacter pomeroyi dss-3
Silicibacter sp. tm1040
Sinorhizobium meliloti 1021
Sodalis glossinidius morsitans
Sphingopyxis alaskensis rb2256
Syntrophobacter fumaroxidans mpob
Syntrophus aciditrophicus sb
Thiobacillus denitrificans atcc_25259
Thiomicrospira crunogena xcl-2
Thiomicrospira denitrificans atcc_33889
Verminephrobacter eiseniae ef01-2
Vibrio cholerae o1_eltor_n16961
Vibrio fischeri es114
Vibrio parahaemolyticus rimd_2210633
Vibrio vulnificus yj016
Vibrio vulnificus cmcp6
Wigglesworthia glossinidia *P274
Wolbachia endosymbiont of Brugia malayi *P12475
Wolbachia sp. *P272
Wolinella succinogenes dsm_1740
Xanthomonas axonopodis citri_306
Xanthomonas campestris vesicatoria_85-10
Xanthomonas campestris campestris_8004
Xanthomonas campestris campestris_atcc_33
Xanthomonas oryzae oryzae_kacc10331
Xanthomonas oryzae oryzae_maff_311018
Xylella fastidiosa 9a5c
Xylella fastidiosa temecula1
Yersinia enterocolitica 8081
Yersinia pestis microtus_91001
Yersinia pestis antiqua
Yersinia pestis nepal516
Yersinia pestis kim
Yersinia pestis co92
Yersinia pseudotuberculosis ip_32953
Zymomonas mobilis zm4

Spirochaetes:
Borrelia afzelii pko
Borrelia burgdorferi b31
Borrelia garinii pbi
Leptospira borgpetersenii hardjo-bovis_l55
Leptospira borgpetersenii hardjo-bovis_jb1
Leptospira interrogans copenhageni_fi
Leptospira interrogans lai_56601
Treponema denticola atcc_35405
Treponema pallidum nichols

Thermotogae:
Thermotoga maritima msb8

Eukaryota

Apicomplexa:
Plasmodium falciparum *P9538

Arthropoda:
Drosophila melanogaster *P9554

Ascomycota:
Aspergillus fumigatus *P9521
Candida albicans *P9526
Candida glabrata *P12362
Debaryomyces hansenii *P12365
Emericella nidulans *P9520
Eremothecium gossypii *P10630
Kluyveromyces lactis *P12363
Saccharomyces cerevisiae *P9518
Schizosaccharomyces pombe *P9517
Yarrowia lipolytica *P12364

Basidiomycota:
Filobasidiella neoformans *P9581

Microsporidia:
Encephalitozoon cuniculi *P9545

Nematoda:
Caenorhabditis elegans *P9548

Streptophyta:
Arabidopsis thaliana *P9506

Extra databases ("unfinished sequences" and composite collections), for use only with the query ORFs Matching a Set of Genomes:
Caenorhabditis elegans
Drosophila melanogaster
228 bacteriophage genomes collected from NCBI on July 26, 2004

Define this as your set number:
1
2

Note

Genome query for

Define a set of genomes

Archaea

Bacteria

Eukaryota